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New Publication Cites CMCI Grant

Where does a cell put it’s resources?

CMCI participant and Department of Physics faculty member Andreas Vasdekis, and his research colleagues Hamdah Alanazi, Amrah Canul and Christopher Williams published a study in the journal Nature Communications. They introduce a new imaging technique to record how a single cell allocates its resources between the production of chemicals and cell growth. These measurements have only been possible on groups of cells, resulting in an average and will be useful in developing biotechnologies and tracking human health.

Chemistry Faculty Awarded CMCI Modeling Access Grant

Project Team: Kristopher Waynant, Darren Thompson, Tyler Siegford, Jacob Kennedy, Dharmesh Patel

Start Date: February 1, 2019

In preparation for a grant proposal to the National Institute for Dental and Craniofacial Research, CMCI Postdoctoral Fellow Dharmesh Patel will be dedicating some of his time over the next few months to prepare models for Chemistry faculty Kristopher Waynant and Darren Thompson.

The project title is, “Exploring glycosylation dependence on the bacterial affinity of the Mucin7 repeat peptide sequence with modeled and synthesized carbon-linked amino acid conjugates.”

Deep Learning for Breast Ultrasound Tumor Detection

Project Director: Min Xian

Project Team: Aleksandar Vakanski

Breast cancer is one of the leading causes of death in females. Early detection of breast tumors is critical to increasing the survival of women diagnosed with this disease. This project serves as a key step to achieving the long-term goal of making accurate early detection of breast cancer available to more women at lower cost via less expensive and even portable devices. It focuses on improving existing approaches by modeling breast anatomy and implementing new deep learning architectures for breast tumor segmentation. If successful, the resulting models will accurately segment images of varying quality, collected with different imaging devices and settings. Breast ultrasound images from four medical schools will be used in this research. The success of the proposed project will improve the robustness and accuracy of tumor segmentation methodologies and will broaden the use of computer-aided diagnosis in the early detection of breast cancer in clinical practice.

Congratulations, Madison Bergeman

College of Science Dean Ginger Carney recently announced the recipient’s of this year’s Hill Undergraduate Research Fellowships. Madison Bergeman, who works with Professor Christine Parent, was one of eight recipients for her project, “Effects of sequential co-infection of viruses in Drosophila adult flies.”

Additionally, CMCI-affiliated undergraduates Brandon Larsen and Nicole Recla were also each awarded a $1000 research grant. Brandon and Nicole also work with Christine Parent.

Geospatial Modeling (GM)

Updated: February 2021

Working Group leader: Erich Seamon

Group members: Bruce Godfrey, Claudio Berti, Paul Gessler, Raymond Dezzani, Jason Karl, Vincent Jansen, Marshall Ma, Luke Sheneman, Naveen Joseph, Alan Kolok, Daniel Cronan, Felix Liao, Jeff Hicke, Chao Fan

Schedule: TBD

Description:

The Geospatial Modeling (GM) Working Group will explore and propose platforms and methodologies for performing spatially-explicit modeling across landscape and watershed scales.  This working group will focus on the interactions of spatial patterns and human and ecological processes as well as enabling heterogeneous data and model interoperability.

Our goal is to build an active community around geospatial modeling in support of current and future IMCI projects, as needed.


Specific areas of interest:

-Climate associations with health

Upcoming related events:

April 2021: University of Idaho Geospatial analysis workshop